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Es represent the gag sequences sampled from Cameroon in this study, while red squares represent intragene recombinant fragments in our samples. The blue squares show the new divergent branches formed by viruses sampled in this study. Sequence C.ZM.2006.ZM1464F appears to have been mis-labelled in the LANL database, and consistently groups with subtype A1. Additional file 2: Detailed phylogenetic a
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Equences previously identified as belonging to these known clades by constructing maximum likelihood trees from all available gag and nef sequences for each clade, and selecting one sequence from each of the up to ten most basal lineages from the root of these clades. Anonymously-donated HIV-infected blood units were collected between December 2006 and August 2007 from Yaound?Central Hospital, Cam
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D. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.AbstractBackground: Alveolar macrophages (AM) avidly bind and ingest unopsonized inhaled particles and bacteria through class
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Type 1: subtype G is a circulating recombinant form. J Virol 2007, 81:8543?551.doi:10.1186/1743-422X-10-29 Cite this article as: Tongo et al.: Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic. Virology Journal 2013 10:29.Submit your next manuscript to BioMed Central and take full advantage of:?Convenient online sub
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Type 1: subtype G is a circulating recombinant form. J Virol 2007, 81:8543?551.doi:10.1186/1743-422X-10-29 Cite this article as: Tongo et al.: Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic. Virology Journal 2013 10:29.Submit your next manuscript to BioMed Central and take full advantage of:?Convenient online sub
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Type 1: subtype G is a circulating recombinant form. J Virol 2007, 81:8543?551.doi:10.1186/1743-422X-10-29 Cite this article as: Tongo et al.: Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic. Virology Journal 2013 10:29.Submit your next manuscript to BioMed Central and take full advantage of:?Convenient online sub
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Kh R, Awazi B, Hewlett I: Increased genetic diversity and intersubtype recombinants of HIV-1 in blood donors from urban Cameroon. J Acquir Immune Defic Syndr 2007, 45:361?63. 6. Ndembi N, Abraha A, Pilch H, Ichimura H, Mbanya D, Kaptue L, Salata R, Arts EJ: Molecular characterization of human immunodeficiency virus type 1 (HIV-1) and HIV-2 in Yaounde, Cameroon: evidence of major drug resistance mu
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Cpx (4 each), and clades A, F, CRF01_AE and CRF36_cpx (2 each). In addition, 22 of the studied viruses apparently had nef and gag genes from viruses belonging to different clades, with the majority (8/10) having either a nef or gag gene derived from CRF02_AG. Interestingly, five gag sequences (10 ) and three (5 ) nef sequences were neither obviously recombinant nor easily classifiable into any

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